Program blastn tblastn Database RNA-Seq transcripts

Enter sequence below in FASTA format

Or load it from disk

The query sequence is filtered for low complexity regions by default.

Filter Low complexity Mask for lookup table only

Expect 0.0001 0.01 1 10 100 1000    Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment

Database Genetic Codes (tblast[nx] only) Ciliate Nuclear; ... (6)

Other advanced options:     

Graphical Overview    Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities BLAST XML Hit Table

Descriptions 0 10 50 100 250 500    Alignments 0 10 50 100 250 500 Color schema No color schema Color schema 1 Color schema 2 Color schema 3 Color schema 4 Color schema 5 Color schema 6